Can I bypass a Polaris booster pump if it is removed?

You can either connect the lines to/from the pump and make it an additional return, or the suction line can be plugged off and also the outlet in the pool should be plugged off.
 
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If there was a step down from his main plumbing size (1.5" or 2") to the 3/4" Polaris fittings, be sure to remove them and replace with the appropriate size pipe/fittings so as not to have any unnecessary restriction in the return plumbing.
 
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